FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204185343
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37310341.8272780725499969No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTAGCCATCTCGTAT7340540.3595037671239703TruSeq Adapter, Index 6 (97% over 38bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3648680.1786945108983655No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTAGCCATCGCGTAT3475700.1702227960603421TruSeq Adapter, Index 6 (97% over 38bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2540940.12444282056033766No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2471610.12104737605970083No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2204540.1079675929530358No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)