FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123561158
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGC2901370.23481246428590447No Hit
ACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTC2141640.1733263134358129No Hit
ACCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA1529920.12381884604869113No Hit
AGGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGG1526280.12352425508993692No Hit
AGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTC1317140.1065982240147021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)