FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences218343258
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA34488511.5795546112076426No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4746120.21736966112322095No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTAGCCATCTCGTAT3789260.17354600433781198TruSeq Adapter, Index 6 (97% over 38bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3385050.15503341074080704No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3342650.15309151427977685No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3209520.14699423418881108No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)