FastQCFastQC Report
Sat 17 Dec 2022
EGAF00006142273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26029919
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC841400.3232434184678024No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACGGTGAGATCTCGTATGCCGT476370.1830086370994854TruSeq Adapter, Index 9 (96% over 33bp)
GGAAGAGCACACGTCTGAACTCCAGTCACGGTGAGATCTCGTATGCCGTC382360.14689250473656873TruSeq Adapter, Index 9 (96% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)