FastQCFastQC Report
Wed 8 May 2024
EGAF00006143487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1278733
Total Bases191.8 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61960.4845421209900737No Hit
CCATATGTATATCTCCTTCTTAAAATAACTTCGTATAATGTATGCTATAC14770.11550495685964154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG14180.11089101477790907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG14140.11057820514524924No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)