FastQCFastQC Report
Wed 15 Mar 2023
EGAF00006143937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38035841
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT1117257329.37380298755587No Hit
CGTTAATC913351324.012911926937544No Hit
AAGGGTGA887256323.32684848482777No Hit
TTACTCAG833985121.926295779814623No Hit
GCCACGCA719440.18914791446309812No Hit
CGTTAATA552520.14526299024123063No Hit
TTACTCAA428610.11268582177530924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)