FastQCFastQC Report
Wed 15 Mar 2023
EGAF00006143947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42594540
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT1272692229.879233347748325No Hit
CGTTAATC1002330423.53189868936253No Hit
AAGGGTGA966962322.701555175851176No Hit
TTACTCAG913556021.447725459648115No Hit
GCCACGCA869520.20413884033023952No Hit
CGTTAATA859230.201723037741457No Hit
CAGGGTGA619660.14547873976335934No Hit
TAGGGTGA481910.11313891404860811No Hit
TTACTCAA468490.1099882754925866No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)