FastQCFastQC Report
Wed 15 Mar 2023
EGAF00006143948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70269332
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1834589626.107969832415655No Hit
CAGATGGG1777112925.290021257068446No Hit
TCACATCA1732220924.6511650345559Illumina PCR Primer Index 1 (100% over 8bp)
AGTGGAAC1570750422.353284929476775No Hit
GTCTCCTA2210200.31453266127533414No Hit
CAGATGGA1296440.18449584806071587No Hit
TCACATAA776040.11043793613976578No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)