FastQCFastQC Report
Wed 15 Mar 2023
EGAF00006143953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37893608
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT1116204729.45627927538597No Hit
CGTTAATC907110723.938356569266247No Hit
AAGGGTGA883356723.311496229126558No Hit
TTACTCAG831171921.934356316769836No Hit
GCCACGCA716050.1889632678946803No Hit
CGTTAATA555210.1465181146118364No Hit
TTACTCAA422680.11154387832375318No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)