FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006143987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006143987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46708016
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCCTTCCATCTCGTAT1090390.23344815159779TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCCTTCCATCGCGTAT548370.11740383064011968TruSeq Adapter, Index 11 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)