FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006144146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006144146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43203645
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAATCGGCTGATTCTGCATCTGGAAACTGCCTTCATCTTGAAAGAAA3522600.8153478716899929No Hit
CAAATCGGCTGATTCTGCATCTGGAAACTGCCTTCATCTTGAAAGAAAAG480060.11111562461917276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)