FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006144336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006144336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455967367
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC264534955.801620228668689TruSeq Adapter, Index 9 (100% over 50bp)
GATCGGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATG6778430.1486604193760208TruSeq Adapter, Index 9 (100% over 45bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)