FastQCFastQC Report
Thu 2 May 2024
EGAF00006146861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006146861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42661695
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length111
%GC73

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCG952010.22315334634500575No Hit
CTCGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGG889790.20856883440754054No Hit
GGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGCACGCGTCACACCGGC863950.20251187863023257No Hit
CGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCACCGC849110.19903334829992103No Hit
CGCGTCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGC816420.1913707366760744No Hit
CGAGGAAACACCTGCGCGCGGCCACCTCGAGCGTTCGCGTTCAGGGCGGG806570.1890618738894458No Hit
GGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCG771870.1809281136157389No Hit
CTGCGGTACGAGGAAACACCTGCGCGCGGCCACCTCGAGCGTTCGCGTTC725880.17014795122416024No Hit
GGGACGGCGAGGTCGGGCCGGGGTCCGCACCCCACGCCTTCCCACACGCA711430.16676083779606038No Hit
GGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCG703940.16500516446896918No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG667260.15640728761480294No Hit
GGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGC600100.14066482824932297No Hit
CCCTGCGGTACGAGGAAACACCTGCGCGCGGCCACCTCGAGCGTTCGCGT590230.13835127741642708No Hit
CGGGCGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG587050.13760587805993174No Hit
CGCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGC573520.13443441476012613No Hit
CGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCCGGCGCACGCGTCACAC569860.13357650229321644No Hit
GGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGC554500.12997608275995598No Hit
CGGCGAGCGAGAGGCGGACCGCGGTGCCCGGCCCGGGGACAGTCGCGCCG553990.12985653758014068No Hit
CTCGTCTCGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCC549390.12877828693866944No Hit
GGCGGGCGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG542080.12706480602798365No Hit
GCGGGAACGACACACCACCGTTCGGCCTCGGGCACCTGAGGGACAACCCG521140.12215642158615592No Hit
CGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG505050.11838488836414024No Hit
GGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGTGGGG482390.11307333194332761No Hit
CTCGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCA475870.11154502886019882No Hit
CGGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCG469110.10996046922186284No Hit
GGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGC462300.10836418946785871No Hit
CGGCGGCCGGCCGGCGCACGCGTCACACCGGCCCGAACCCACCGCGATCG456930.10710544904509772No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG455410.10674915752878547No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)