FastQCFastQC Report
Thu 2 May 2024
EGAF00006146862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006146862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42661695
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length111
%GC73

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3896330.9133087656268697No Hit
CGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGTCCT1070210.25085969978454914No Hit
GTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGT998310.23400617345372704No Hit
CTTCGGAGGCGCTCTGCCTCGGAAGGAAGGAGGTGGGTGGACGGGGGGGC675180.15826375393664036No Hit
CGAGACGAGACGCGCCCCTCCCACGCGGGGAAGGGCGCCCGCCTGCTCTC653070.15308111878817754No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG615960.14438244893926508No Hit
GCCGGCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTC573460.13442035062132435No Hit
GGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGG520050.12190092306458991No Hit
CCGCCCTCCTCTTGCCGCCGCGCCCGCCCCTTCCCCCTCCCCCCGCGGGC505860.11857475423796453No Hit
CTCCTCCGAGGCCCCGCCCGTCCTCCTCGCCCTCCCCGCGCGTACGCGCG484100.11347415989917888No Hit
GTCCGCCCTCCTCTTGCCGCCGCGCCCGCCCCTTCCCCCTCCCCCCGCGG468180.10974247507043497No Hit
CTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTCCCTCG465120.10902520399154324No Hit
CGCCCGTCCGCCCGTGGGTCGGGGGCGGTGGTGGGCCCGCGGGGGAGTCC433280.10156183433405541No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)