FastQCFastQC Report
Mon 13 May 2024
EGAF00006151397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006151397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86887186
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC5145280.5921793807432087Illumina Single End Sequencing Primer (100% over 31bp)

[OK]Adapter Content

Adapter graph