FastQCFastQC Report
Thu 16 Jun 2022
EGAF00006153168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71790
Sequences flagged as poor quality0
Sequence length100
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTAAGGTTAGTTAAATAAGTTATTGGGTTTATATTTTGAAAATGTTGGT2216930.880345452012815No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACT2136829.764591168686444No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATATTTTGAAAATGTTGGT47516.617913358406463No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATGAACCCAATAACT44056.1359520824627385No Hit
GTAAGGTTAGTTAAATAAGTTATTGGGTTTATATTTTGAAAATGTTGGTT9351.3024098063797185No Hit
ATACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTTA8151.13525560663045No Hit
CAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTTATTT5010.6978687839531968No Hit
TACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTTAT4350.6059339740910991No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATGAACCCGATAACT3080.42902911268978966No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATACTTTGAAAATGTTGGT3000.41788549937317176No Hit
AGTAAGGTTAGTTAAATAAGTTATCGGGTTCATATTTTGAAAATGTTGGT2980.4150995960440173No Hit
AGGTTAGTTAAATAAGTTATTGGGTTTATATTTTGAAAATGTTGGTTATA2950.4109207410502856No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAGTATGAACCCAATAACT2830.39420532107535866No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGCTCATATTTTGAAAATGTTGGT2660.3705251427775456No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTTATACTTTGAAAATGTTGGT2630.3663462877838139No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAGTATAAACCCAATAACT2620.3649533361192367No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGCTTATATTTTGAAAATGTTGGT2560.3565956261317732No Hit
GTAAGGTTAGTTAAATAAGTTATTGGGTTCATATTTTGAAAATGTTGGTT2490.34684496447973256No Hit
AGTAAGGTTAGTTAAATAAGTTATCGGGTTTATATTTTGAAAATGTTGGT2440.3398802061568464No Hit
ATACAAAAAAAATATAACCAACATTTTCAAAATATGAACCCAATAACTTA2300.320378882852765No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCGATAACT2220.3092352695361471No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATGAGCCCAATAACT2060.28694804290291126No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATATCTTGAAAATGTTGGT1830.2549101546176348No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTCCATATTTTGAAAATGTTGGT1800.25073129962390306No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATAAGCCCAATAACT1780.24794539629474857No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAGATATGAACCCAATAACT1740.24237358963643962No Hit
AATACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTT1700.23680178297813068No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTCTATATTTTGAAAATGTTGGT1690.23540883131355342No Hit
GGTTAGTTAAATAAGTTATTGGGTTTATATTTTGAAAATGTTGGTTATAT1620.22565816966151273No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATAGACCCAATAACT1570.21869341133862655No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATGGACCCAATAACT1490.20754979802200865No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATATTCTGAAAATGTTGGT1400.1950132330408135No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAGATATAAACCCAATAACT1400.1950132330408135No Hit
TAATACAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTT1380.19222732971165898No Hit
TAATACAAAAAAAATATAACCAACATTTTCAGAATATGAACCCAATAACT1360.18944142638250452No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTTATATTCTGAAAATGTTGGT1360.18944142638250452No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTATATTTTGAAAATGTTGGTT1310.18247666805961835No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGGTTATATTTTGAAAATGTTGGT1220.1699401030784232No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTTATATCTTGAAAATGTTGGT1200.1671541997492687No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATATAACCCAATAACTT1140.15879648976180527No Hit
TAATACAAAAAAAATATAACCAACATTTTCAGAATATAAACCCAATAACT1060.14765287644518735No Hit
TACAAAAAAAATATAACCAACATTTTCAAAATATGAACCCAATAACTTAT1050.14625992478061012No Hit
TAATACAAAAAAAATATAACCAACATTTTCGAAATATAAACCCAATAACT1010.14068811812230117No Hit
TAATACAAAAAAAATATAACCAACATTTTCAAAATGAACCCAATAACTTA990.13790221479314668No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATATTTCGAAAATGTTGGT980.13650926312856942No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTTATATTTCGAAAATGTTGGT870.12118679481821981No Hit
TAAGGTTAGTTAAATAAGTTATTGGGTTTATATTTTGAAAATGTTGGTTA870.12118679481821981No Hit
AGTAAGGTTAGTTAAATAAGTTATTGGGTTCATTTTGAAAATGTTGGTTA870.12118679481821981No Hit
AGTAAGGTTAGTTAAATAAGTTATGGGTTCATATTTTGAAAATGTTGGTT810.11282908483075636No Hit
TAATACAAAAAAAATATAACCAACATTTTCGAAATATGAACCCAATAACT800.11143613316617912No Hit
ACAAAAAAAATATAACCAACATTTTCAAAATATAAACCCAATAACTTATT750.10447137484329294No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)