FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006153869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65220189
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCTTTGCGTTCTCGGGGTGCCATAGCCGGGTTTGAGTTAGCAGATC1980150.30360997573926074No Hit
CCTCATTTCATCCTGCTCAGCAGCCTGGGACAGATCTTCAGGTTCCAGGG1035040.1586993254496702No Hit
CTCATTTCATCCTGCTCAGCAGCCTGGGACAGATCTTCAGGTTCCAGGGC918930.14089655581954846No Hit
GGAGGATTAGGGAAGAGAGATGGGGTGTGGGGGCGAGGGATCAGAGGTCT866900.13291896470891856No Hit
CTCGCTGAAGACTTGGAGGATTAGGGAAGAGAGATGGGGTGTGGGGGCGA797720.1223118197342237No Hit
GTGAAAGTCTTCCAGAAGAAATTCTTGCAGCCAGCTTTGCGTTCTCGGGG796050.12205576405183372No Hit
CATAATTTTATTTTGTATTTACAGTTTTCAGTTTCTAATGCAAGGGTCTC739410.11337133659640268No Hit
GCAAGGGTCTCGCTGAAGACTTGGAGGATTAGGGAAGAGAGATGGGGTGT723330.1109058423611744No Hit
CAGTTTCTAATGCAAGGGTCTCGCTGAAGACTTGGAGGATTAGGGAAGAG676690.10375468246496494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)