FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006153870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65220189
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAGATCTGTCCCAGGCTGCTGAGCAGGATGAAATGAGGCTTGAGCTGC1042410.1598293436408165No Hit
CGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATCCTGTTA969120.14859202569928154No Hit
CCCAACCAGACGGAGAATGATGCCCTGGAACCTGAAGATCTGTCCCAGGC904700.13871471608277616No Hit
CGAGAACGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATC875050.13416857776968416No Hit
CAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCTGAACCCAACCA836380.12823943211817435No Hit
CTTTCACATCCTGTTAGCTTTCTTAACTAGTATTGTCCATATCAGACCTC713760.10943850530699933No Hit
CGGAGAATGATGCCCTGGAACCTGAAGATCTGTCCCAGGCTGCTGAGCAG707740.10851547823634794No Hit
TGAGGCTTGAGCTGCAGAGATCTGCTAACTCAAACCCGGCTATGGCACCC673910.10332843408350137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)