FastQCFastQC Report
Sat 16 Jul 2022
EGAF00006153873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66207540
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCTTTGCGTTCTCGGGGTGCCATAGCCGGGTTTGAGTTAGCAGATC2058830.310966092381623No Hit
CCTCATTTCATCCTGCTCAGCAGCCTGGGACAGATCTTCAGGTTCCAGGG1049090.15845476210111414No Hit
GGAGGATTAGGGAAGAGAGATGGGGTGTGGGGGCGAGGGATCAGAGGTCT938030.1416802376285239No Hit
CTCATTTCATCCTGCTCAGCAGCCTGGGACAGATCTTCAGGTTCCAGGGC928850.1402936886040472No Hit
CTCGCTGAAGACTTGGAGGATTAGGGAAGAGAGATGGGGTGTGGGGGCGA845620.12772261286252293No Hit
GTGAAAGTCTTCCAGAAGAAATTCTTGCAGCCAGCTTTGCGTTCTCGGGG835770.12623486690488728No Hit
CATAATTTTATTTTGTATTTACAGTTTTCAGTTTCTAATGCAAGGGTCTC767280.11589012369286036No Hit
GCAAGGGTCTCGCTGAAGACTTGGAGGATTAGGGAAGAGAGATGGGGTGT757380.11439482572528749No Hit
CAGTTTCTAATGCAAGGGTCTCGCTGAAGACTTGGAGGATTAGGGAAGAG714870.1079741068766488No Hit
GGACAATACTAGTTAAGAAAGCTAACAGGATGTGAAAGTCTTCCAGAAGA669060.10105495537215248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)