FastQCFastQC Report
Sun 24 Jul 2022
EGAF00006153874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66207540
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAGATCTGTCCCAGGCTGCTGAGCAGGATGAAATGAGGCTTGAGCTGC1115570.16849591451366416No Hit
CGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATCCTGTTA985800.1488954279225599No Hit
CCCAACCAGACGGAGAATGATGCCCTGGAACCTGAAGATCTGTCCCAGGC950780.14360600016251923No Hit
CGAGAACGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATC890000.13442577688281426No Hit
CAGGAACTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCTGAACCCAACCA869580.13134153602444676No Hit
CGGAGAATGATGCCCTGGAACCTGAAGATCTGTCCCAGGCTGCTGAGCAG744250.1124116679157691No Hit
CTTTCACATCCTGTTAGCTTTCTTAACTAGTATTGTCCATATCAGACCTC728970.11010377367894955No Hit
TGAGGCTTGAGCTGCAGAGATCTGCTAACTCAAACCCGGCTATGGCACCC727140.1098273701152467No Hit
CCAGACTCCGTCAGTTTCTGCAGAAGTCCCTGGCTGCTGCCGCGGGGAAG673850.10177843792413975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)