FastQCFastQC Report
Fri 3 May 2024
EGAF00006153972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006153972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48654482
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC1599420.3287302493529784Illumina Single End Sequencing Primer (100% over 31bp)
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC744020.15291910825399396No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT642120.13197550844339478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)