FastQCFastQC Report
Tue 7 May 2024
EGAF00006158412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509153515
Total Bases76.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT10020100.19679919130087906No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT5772230.11336914761356405No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC5566290.10932439502062555No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)