FastQCFastQC Report
Thu 21 Jul 2022
EGAF00006158495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69943218
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG958300.1370111395217761TruSeq Adapter, Index 19 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT763880.10921430581017876TruSeq Adapter, Index 19 (97% over 40bp)
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTG749600.10717264967705661No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA742320.1061318053738963No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC703600.10059588622302164No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)