FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158532
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences23827340
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC2280390.9570476603766933No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2247480.9432357955189291No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1816310.7622798012703055No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1799130.7550695965223143No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1226580.5147784016176375No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT1115740.4682604101003301No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT969640.40694429172538776No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC922800.38728620148115567No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC670700.28148337162268217No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG563050.2363041783094546No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC519850.21817374495012873No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG518490.21760297204807588No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA509110.21366631776774075No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA504920.2119078336062691No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG462730.19420128306390894No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC430860.18082589160183218No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG408340.1713745638413688No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT395370.1659312369739971No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA390840.16403005958701222No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC379080.15909455272808462No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG342490.14373824354711856No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC341590.14336052618546594No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC330780.13882372098606055No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG322800.13547462704607396No Hit
TGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC319230.13397634817818524No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA290390.12187260516700563No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC289490.121494887805353No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA286950.12042888547357783No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA285940.12000500265661211No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT281690.11822133733769694No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC258650.10855177287938982No Hit
CTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGA257020.10786768476884116No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC251920.10572728638614298No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC250950.10532019100747292No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)