FastQCFastQC Report
Sat 28 May 2022
EGAF00006158533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158533
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences33006088
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3143210.952312191617498No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1988620.6025009689121594No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1980050.5999044782283801No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1591530.4821928609049337No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1008080.30542244206583946No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC847590.25679807919072384No Hit
TGGCACATGCAGCACAAGTAGGTCTACAAGACGCTACTTCC820630.24862988912833292No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC807020.24450640742398796No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG708710.2147209932906923No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG552950.16752969936940118No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG532840.16143688400758066No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT518180.15699527917395117No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA515490.15618027801416515No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA488340.14795452281409419No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG466630.14137694839812584No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC434500.13164238064201975No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG421170.12760373177215065No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC414800.1256737847878246No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA413550.1252950667767716No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA408300.12370445113034906No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC406940.12329240593432339No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC406240.12308032384813371No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC393720.11928708424942697No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA389520.1180145917322889No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT384810.11658758226664122No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA384780.11657849303437597No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC382850.11599375242531014No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCA366020.11089469312449267No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC346970.10512303063604508No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA346450.10496548394344704No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)