FastQCFastQC Report
Sat 28 May 2022
EGAF00006158536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158536
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences14405560
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1157050.8031968212273595No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA908490.6306523314609082No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC803830.5579998278442491No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG653550.45367899616536944No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC567540.39397288269251596No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC462910.32134120436831337No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC454370.31541293778235624No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG438260.304229755733203No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT320170.22225446286017345No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC290180.20143611216780188No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA275960.19156492354340962No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG275090.19096099006217043No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG261930.1818256284379087No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA234380.16270106819866773No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC230070.15970916784908049No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC215990.1499351639228187No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC215910.1498796298096013No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC206420.14329189562918762No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG197180.1368777055525783No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC196940.13671110321292612No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA190300.1321017718158822No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC187150.1299151161079472No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC184180.12785341215475135No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG181330.1258750093713816No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA180590.1253613188241207No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA180240.12511835707879457No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT164250.11401847619946742No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC160660.11152638286883675No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC159340.11061007000074971No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA158770.11021438944407577No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG156410.10857613310416254No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC154380.10716695498127111No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT151310.10503583338655352No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC149470.1037585487825534No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG149010.10343922763155337No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA146470.10167601953690103No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)