FastQCFastQC Report
Sat 28 May 2022
EGAF00006158538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158538
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences17986771
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1788770.9944920074870581No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1459790.8115909186812909No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1022860.5686734989843368No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC924960.5142446078843167No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA859120.477639927700197No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC696000.38695105419421866No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC608250.33816519930119754No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT476420.26487244430920925No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC346330.1925470669527065No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC316980.176229518905867No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG285000.15844978512263264No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA280990.15622036884774929No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC280430.15590902891908726No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC276830.15390755794911717No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA270940.15063292905658276No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC266290.14804769572037138No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA252930.14062001456514903No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC251830.1400084539909915No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT248730.1382849651001839No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA240760.13385393075833343No Hit
GGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA234130.13016788838863852No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA230360.12807190351175318No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC229040.12733803082276413No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG228140.1268376630802716No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG222080.12346852028082193No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC213260.1185649164043952No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC206710.11492335116736628No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG200190.1112984648550871No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG197220.10964725130486178No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT195840.10888002076637324No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA183010.10174700061506316No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA182970.10172476204873016No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG180560.10038488842716684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)