FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158540
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences34306559
Sequences flagged as poor quality0
Sequence length41
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1628430.4746701643846006No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1135020.33084635506580534No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1011000.2946958335285098No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC972160.2833743833067024No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC708930.20664561549294408No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT599660.1747945633369992No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT344280.10035398770246821No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)