FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158542
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences38060278
Sequences flagged as poor quality0
Sequence length41
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2783080.7312295511871983No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2219130.5830566975890192No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1718420.4514995923046069No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1682080.4419515800699091No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT1056130.2774887771445075No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1041010.2735161314376106No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC979850.2574468846496602No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG953490.25052102877440885No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC565010.14845135918345104No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA495910.13029594791714344No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC493240.12959442913160013No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC472230.12407423823861717No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC460920.12110263619198999No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA452990.11901909912481459No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG441780.1160737711900055No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT435400.11439748285601067No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT428060.11246896304856206No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG413390.10861455084484668No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT388660.10211696299223037No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC386790.10162563710123189No Hit
CTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTC380620.10000452440205507No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)