FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158545
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences42956550
Sequences flagged as poor quality0
Sequence length41
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2718160.6327696241900246No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2090540.4866638498669004No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2005560.46688106935962037No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1841440.4286750216206841No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1364200.31757671414487426No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1337570.31137742672537716No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC917790.213655426238839No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT618690.14402692953693907No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC589000.13711529440795409No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT576960.13431246224382543No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC545350.1269538638461422No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)