FastQCFastQC Report
Sat 28 May 2022
EGAF00006158546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158546
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences20396183
Sequences flagged as poor quality0
Sequence length41
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC885210.4340076768285517No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG704060.3451920391182997No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT475330.2330485071643062No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA442490.21694745531553625No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC386400.1894472117650641No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)