FastQCFastQC Report
Sat 28 May 2022
EGAF00006158547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158547
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences35398549
Sequences flagged as poor quality0
Sequence length41
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1960600.5538645100961624No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1944720.5493784505121948No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1890820.5341518376925563No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1390830.3929059352122032No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC750540.21202563980800454No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC730950.2064915146663215No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT544080.15370121526732636No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG469350.13259018046191667No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT453870.1282171198599129No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC422180.1192647755138212No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT389930.11015423259298002No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)