FastQCFastQC Report
Sat 28 May 2022
EGAF00006158548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158548
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences26838093
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2187530.815083992741213No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2057960.7668055997868404No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1376840.5130170761387555No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1269990.47320426231476287No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1162940.4333169275477211No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1031860.3844759014733275No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC670520.24983891366648145No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC564490.2103316357089902No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT552900.2060131470592937No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC537500.20027503444451136No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC534710.19923546728897618No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC534320.19909015145003037No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC514210.1915970706264413No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA505340.1882920668022128No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT489890.18253532395166827No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG471420.17565331486108196No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG454690.16941963797502305No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA440250.16403922588687656No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA430340.16034671315879262No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT413120.15393045996226334No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG407410.15180288703821096No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC389070.1449693165606066No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG389030.14495441237199677No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC385940.14380306380188787No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT379540.14141839362431602No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA375820.14003230408360234No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC361380.13465189199545585No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA340580.12690171391834731No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG339580.12652910920310173No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG332460.12387616363055302No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC307070.11441572991046718No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC306760.11430022244874104No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG305080.11367424652712844No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA290260.1081522446471886No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA279400.10410575743962137No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC278100.10362137130980208No Hit
TCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCCCG277590.10343134290502683No Hit
TTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCT271910.1013149481224318No Hit
CTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCCC270270.10070387638942901No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)