FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158550
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences31728116
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3047130.9603879410930041No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2826990.8910046849299214No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1871600.5898869003126439No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1754760.5530615180554685No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1630710.5139637033601364No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1532620.48304790615364623No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC1017590.3207218480920834No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG808550.25483706627900626No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG763620.24067612460821813No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT754250.23772290797222248No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC691750.2180242911366058No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA657000.2070718601760029No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA638760.2013230158386965No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT628850.1981996031532411No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC608330.19173215327377144No Hit
TCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACC603750.19028863863205744No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA602680.1899513983118317No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG601590.18960785443421854No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC599970.18909726628583934No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA528790.1666629055440922No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC526690.16600103201841548No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT518040.16327474344836612No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC505800.15941696632727895No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC465570.14673736064252915No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG430940.13582275102625066No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG426550.13443912017971693No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT408810.1288478647770955No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC406390.1280851343332204No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC399690.1259734426084423No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC390940.12321563625145597No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG378960.11943980537640496No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC377690.11903952948230521No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA376800.11875902117856604No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC367300.1157648314195523No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG355250.1119669380936454No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA353870.11153199263391497No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA351070.11064949459967935No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG343770.10834869615327931No Hit
CACGCGACTCCCACAAGGTTGCAGCCGGAGCCGCCCAGCTC331520.10448776725349844No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)