FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158551
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences26219269
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2797611.0670053387071927No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2208470.8423079987470284No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2079220.7930121926740216No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1981250.7556465437690121No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1553620.5925489379585678No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1330150.5073177288047199No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC918230.3502118995003255No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT787430.30032492515332904No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT694690.26495399242442647No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG691610.2637792838541761No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG648940.24750499336957105No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT586040.2235150034121851No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC551210.21023088019730832No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT482740.18411649844242414No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG479940.18304858156037837No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA465150.1774076920298579No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC457630.17453957240379203No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC449290.17135870569084136No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA427100.1628954644006284No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC413610.15775039342248634No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA405430.15463055053136682No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC396830.15135052010794048No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG385580.14705978263543504No Hit
ACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT379510.14474469139471433No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC361480.13786806947211228No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA358710.13681159455665984No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG344650.13144912621324414No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC340240.12976715712402204No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG318200.12136112566677583No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG307820.1174022052254775No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG294660.11238299587986225No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC291440.11115489146550958No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG286310.10919831517804711No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA284940.10867579870361754No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT282340.10768416159886074No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC275340.10501436939374625No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC274390.10465204045162359No Hit
GGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTC272160.10380152093485137No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC267830.10215006375654487No Hit
CTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCC267610.10206615600152696No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC266480.10163517525984421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)