FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158562
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences35327474
Sequences flagged as poor quality0
Sequence length36
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACC4616881.306880871244856No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGG3361400.9514974096364772No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATA2018840.5714645773994484No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAAC2016940.5709267523627645No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTA1803720.5105714606144781No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCT1246690.35289531314919376No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAG1213500.3435003589557521No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGC1154640.32683910545090206No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTA1125720.3186528422609553No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAAT962260.2723829051576119No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGA960080.27176582169446933No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACC836190.23669679864459034No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCAC746220.2112293678285631No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCA645760.18279257667842314No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACC575960.16303458322550884No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTT565130.15996898051641054No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTG552800.1564787790941407No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAAC437390.1238101541027247No Hit
GACAACTCGGTGGTGGCCACTGCGCAGACCAGACTT398040.11267151452719207No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTC392050.11097595033259383No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCC390350.11049473845766614No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGC386740.10947287088796669No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTG383190.1084679872667941No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTC370580.10489852741806562No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGAT366920.10386250655792713No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAG354780.10042608763932569No Hit
TAAACCTAGCCCCAAACCCACTCCACCTTACTACCA353330.10001564221659323No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)