FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158564
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences34017363
Sequences flagged as poor quality0
Sequence length41
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1945400.5718844226696819No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1504230.4421947697709549No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1335740.39266418152400584No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG994490.29234776369937904No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC927560.2726725172671379No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC779670.2291976600302616No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC688760.2024730723542563No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG362190.10647209779311817No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT353210.1038322694207661No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)