FastQCFastQC Report
Sat 28 May 2022
EGAF00006158565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158565
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences28648463
Sequences flagged as poor quality0
Sequence length41
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA3463201.208860663833868No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2670520.9321686821383752No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2126570.7422981121186153No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1374150.47965924035785096No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1231610.4299043896351438No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1127090.3934207569879054No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC862770.30115751759527204No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT830130.2897642362174892No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT788480.275225934459381No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC570350.19908572407531952No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA402700.14056600523385843No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC365290.12750771306649156No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG343780.1199994568644049No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC341690.11926992383500643No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG339210.11840425784796901No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC334130.11663103881000528No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA318540.1111892110931047No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT315320.11006524154541902No Hit
TAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA298470.10418359965768495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)