FastQCFastQC Report
Sat 28 May 2022
EGAF00006158567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158567
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences40825390
Sequences flagged as poor quality0
Sequence length41
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA4681771.1467790019887134No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2998080.7343665302401275No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2868930.7027318048890654No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC2803250.6866437773160281No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2550430.6247166285490475No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC2372290.5810820178325302No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC2211170.5416163813744339No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT2026340.4963430845363633No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA1445250.35400764083331476No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG1086800.26620688742961185No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG983260.24084521911486947No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT956490.2342880251725703No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC823710.2017641472622797No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC820960.20109054683862174No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT783120.19182180500908871No Hit
TTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTT633460.15516324522558142No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC539860.13223633626035172No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC536030.13129819457940267No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA526930.12906918954111646No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT482830.11826708820172936No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG439300.10760460585924592No Hit
GCAGCAGGAGGAGGCAGAGCACAGCATCGTCGGGACCAGAC429920.1053070160505509No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC422130.10339888975953444No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)