FastQCFastQC Report
Sat 28 May 2022
EGAF00006158568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158568
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences37202441
Sequences flagged as poor quality0
Sequence length41
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2426660.6522851551595767No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2064650.5549770242226848No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1938500.5210679589546288No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1199870.32252453541959786No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC769780.20691653002016722No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC752310.20222060159977134No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG725170.19492538137484045No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC628970.16906686311255759No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG626520.16840830417552438No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC443030.11908627178523043No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT393440.10575650130054638No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG377040.10134818841591604No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)