FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158569
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences28787887
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3277701.1385691488923797No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2335210.8111779791271239No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1808390.6281773997514997No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1424440.49480533253447884No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1284630.44623976744107685No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1045320.3631110543125308No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC802600.2787978152060969No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG683190.2373185638807044No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT657290.22832172434190812No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC639930.2222914102726609No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT631280.21928667428769608No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG600580.20862246680348578No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG525020.18237531639609394No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT519180.18034668539584028No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC502580.17458037125128356No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA459470.1596053228915342No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC457020.15875427050272914No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG446540.1551138504885753No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA427090.148357536626429No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG425060.1476523789328477No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA414180.14387301158990934No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA402970.13997901270072374No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG402630.1398609074712569No Hit
ACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT402150.13969417067671552No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA401290.13939543391982886No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC400200.13901680244889109No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC395330.13732511872093983No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG393000.1365157505307701No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC381270.1324411201141647No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG347040.12055070245343119No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT341640.11867491351484045No Hit
CTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTC330340.11474965147667837No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT319730.11106407358066953No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC316030.10977881078941293No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC306220.10637112755097308No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG303120.10529428575289322No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG301390.10469333855590025No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)