FastQCFastQC Report
Sat 28 May 2022
EGAF00006158572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158572
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences36355024
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC3402570.9359284152858762No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2663180.7325479966675308No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2637030.725355043088405No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2438400.6707188530531571No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1777400.4889007912634028No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1357060.37327990761331914No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC1184640.3258531750659826No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT824210.22671144433847715No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG684260.18821607709569935No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA677640.1863951458263375No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC626690.17238057661576567No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC626280.17226779990572966No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC596590.16410111570824434No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG579580.1594222575674823No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT546310.15027084014578013No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT536670.14761921213420184No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC524730.14433493428583627No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG520410.14314665285326175No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA512560.1409873914537919No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC494750.13608848119588646No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA492860.1355686080691351No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA484460.13325806083912914No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT481050.1323200886898053No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC479750.13196250399944723No Hit
GGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA476910.13118131898358806No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC476800.13115106181748085No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG463880.12759722012561453No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA452970.1245962593780711No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC443530.12199964439577869No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGC437500.12034100156281012No Hit
CTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTC409090.11252640075275427No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG401720.1104991706235705No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA389870.1072396486383835No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC383450.10547373039830753No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA383240.10541596671755739No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA378870.10421393202766144No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT378460.10410115531762543No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG375530.10329521443858762No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)