FastQCFastQC Report
Sat 28 May 2022
EGAF00006158574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158574
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences28303064
Sequences flagged as poor quality0
Sequence length41
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2413220.8526356015730312No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2244720.7931014112111677No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1689320.5968682401311745No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1580500.5584201060351629No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1199840.4239258336129262No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC880670.311157124189805No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC748420.2644307344250785No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG727500.2570393085356412No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC719780.2543116886567475No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT642670.22706728854515543No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT596780.21085349628577316No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC573000.20245157909405145No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG551870.1949859562908101No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC530760.18752739986031194No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA519590.18358083068320802No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT486660.17194604796145038No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG485470.17152559878322715No Hit
CCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGG466080.16467475040864835No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA457950.1618022698885181No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG455410.1609048405501256No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC441740.1560749747801157No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC431620.15249939017203226No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG427010.15087059125471364No Hit
ATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC416790.14725967478291396No Hit
ACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT396380.14004844139842954No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA388810.1373738193151102No Hit
CTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTC379970.13425048256259464No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC371470.1312472741467143No Hit
TCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCAT369670.13061130059982198No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG367730.12992586244372695No Hit
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGG354810.12536098565158882No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT349640.12353432829745924No Hit
ATCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGC345900.1222129165944719No Hit
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCC340530.12031559551290985No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA338660.11965488966141616No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAG336200.11878572581399667No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA301150.10640190758145478No Hit
CTTTCCAACTTGGACGCTGCAGAATGGCTCCCGCAAAGAAG298950.10562460657969751No Hit
ATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC295160.10428552894485206No Hit
GTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG294020.10388274569848692No Hit
CCTTTCGGCCGGAACCGCCATCTTCCAGTAATTCGCCAAAA291570.10301711503743906No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCT286510.10122932273339735No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)