FastQCFastQC Report
Sat 28 May 2022
EGAF00006158579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158579
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences25047715
Sequences flagged as poor quality0
Sequence length41
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2439420.9739091969067837No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2332150.931082935110049No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1950550.7787337088433017No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1906390.7611033581306718No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1139050.45475206021786824No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1003260.40053953025255995No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC650540.2597202978395434No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT573420.2289310621747333No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT454020.1812620432642259No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC451640.18031185679013034No Hit
CATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTC384730.1535988412515872No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT342620.13678692846832535No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG332010.132551013136328No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC253660.10127071471389705No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)