FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158580
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences29962974
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3057951.0205762618890901No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2756500.9199687587754141No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2042790.681771442314104No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1619760.5405871927132466No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC762790.2545775329244687No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC753800.25157716320149No Hit
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGG716960.23928198849686952No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC501630.16741662559931467No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG431780.1441045204658256No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC409070.13652516602657666No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGG408910.13647176678790296No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC404970.135156810535563No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA399530.13334123642065704No Hit
GCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG384580.1283517450570828No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGT374930.12513110347457498No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT369000.12315199419123081No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG368530.1229951339276268No Hit
ATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA346310.1155793146568161No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT334430.11161442118529355No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA323730.10804334709898958No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC299810.10006016091727075No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)