FastQCFastQC Report
Sat 28 May 2022
EGAF00006158581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158581
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences37139589
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA3996181.0759892900268768No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2752730.7411848310976193No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2404060.6473038783493269No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1847720.49750685178557036No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC987050.2657676152528236No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC894270.24078618640610158No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC631810.17011766069893774No Hit
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGG575170.15486708805528246No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC497310.13390293575946682No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA463130.12469981829901242No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT436900.1176372737996643No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG434200.1169102867562697No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA415920.11198831521802785No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG397340.10698556734163106No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC394780.10629627592270878No Hit
TGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATT387300.10428225255804527No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC382700.10304368203966931No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)