FastQCFastQC Report
Sat 28 May 2022
EGAF00006158582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158582
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences31723838
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT2566660.809063518733137No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2038500.6425767273177981No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1612130.5081762175181956No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1266110.3991036645692113No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG866680.27319519157801775No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC839910.26475674223276513No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC788400.2485197408964199No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC761940.24017900986633456No Hit
TGGCACATGCAGCACAAGTAGGTCTACAAGACGCTACTTCC719390.22676638305869548No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG613770.1934728074200858No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG505550.15935965881555691No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG424980.13396235348320717No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA410730.12947046318922698No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT404430.12748457484873046No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG402500.12687619953172122No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA383500.12088701247308095No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA374000.11789241894376085No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG350130.11036810867587964No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC349460.1101569110269697No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA348700.10991734354462408No Hit
ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGA334970.10558936784382772No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC329110.10374217646679446No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT320440.10100921584582548No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)