FastQCFastQC Report
Sat 28 May 2022
EGAF00006158583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158583
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences31733360
Sequences flagged as poor quality0
Sequence length41
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3033830.9560380621528889No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2032420.6404679491865973No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1515100.47744707777556494No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1232250.38831374931617707No Hit
TGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCG1222830.3853452644157442No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC970690.30588944883239594No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC837650.26396511431503No Hit
TGGCACATGCAGCACAAGTAGGTCTACAAGACGCTACTTCC830870.2618285614886038No Hit
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTC772150.24332437535766774No Hit
AGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG644480.20309226630901991No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT505360.15925196701515376No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCG491230.15479923966450448No Hit
CCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG466560.14702508653354074No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTG434940.1370608091925973No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCA432450.13627614598643195No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA415150.13082446989540344No Hit
TTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGA391710.12343792148073825No Hit
CCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCAA387480.12210493940761394No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG383840.12095788154799869No Hit
CTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCC379640.11963435324844264No Hit
TCTCTCTCGGGTGGAGTCTTCTGACAGCTGGTGCGCCTGCC367590.11583708753185923No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC358500.1129725941406772No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC357140.11254402307224953No Hit
TTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCC352120.11096209162849444No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA340300.10723730484260097No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT335130.10560810453100461No Hit
GCCATTACTGCAGGAAAAGGTCCCGGAGAGCTGAGCAGTCA325160.10246630044848702No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)