FastQCFastQC Report
Wed 1 Jun 2022
EGAF00006158587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158587
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences28249729
Sequences flagged as poor quality0
Sequence length41
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2489350.8811942939346427No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1797110.6361512352914961No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA1677030.5936446328387788No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1042040.36886725532836084No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT1041410.3686442443394767No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC840730.29760639473745043No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC782310.2769265503396511No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT407560.14427041052323014No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC364590.12905964513854276No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT334210.11830555967457246No Hit
ACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTAC293990.1040682549556493No Hit
CTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAAA292430.1035160372688885No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)