FastQCFastQC Report
Sat 28 May 2022
EGAF00006158590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006158590
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences32623147
Sequences flagged as poor quality0
Sequence length41
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2607660.7993281580100166No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACA2472300.7578361462185116No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG2001810.613616460729555No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1656920.5078970462291698No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTAC1380040.42302479279512795No Hit
TGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC1194450.36613573791639414No Hit
CTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT805470.24690137956341246No Hit
TGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATT783350.24012091782561626No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATT663960.20352420322907536No Hit
AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT515560.15803502954512633No Hit
TAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCC493950.15141089852551626No Hit
TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAA446290.13680163964561726No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)